[Tue Feb 24 08:10:54 1998] Log file created [Tue Feb 24 08:11:46 1998] Settings changed [Tue Feb 24 08:11:49 1998] Running CANOCO: [Tue Feb 24 08:11:49 1998] CON file [C:\CAJO\SAMPLES\UNIMODAL\EPIALGAE\Anomaly.con] saved Program CANOCO Version 4.0 September 1997 - written by Cajo J.F. Ter Braak Copyright (c) 1988-1997 Centre for Biometry Wageningen, CPRO-DLO Box 100, 6700 AC Wageningen, the Netherlands. CANOCO performs (partial) (detrended) (canonical) correspondence analysis, principal components analysis and redundancy analysis. CANOCO is an extension of Cornell Ecology program DECORANA (Hill,1979) For explanation of the input/output see the manual or Ter Braak, C.J.F. (1995) Ordination. Chapter 5 in: Data Analysis in Community and Landscape Ecology (Jongman, R.H.G., Ter Braak, C.J.F. and Van Tongeren, O.F.R., Eds) Cambridge University Press, Cambridge, UK, 91-173 pp. *** Type of analysis *** Model Gradient analysis indirect direct hybrid linear 1=PCA 2= RDA 3 unimodal 4= CA 5= CCA 6 ,, 7=DCA 8=DCCA 9 10=non-standard analysis Type analysis number Answer = 5 *** Data files *** Species data : EPIALGAE.DTA Covariable data : Environmental data : SITETIME.DTA Initialization file: Forward selection of envi. variables = 0 Scaling of ordination scores = -1 Diagnostics = 3 File : EPIALGAE.DTA Title : MACROALGAE FORSMARK - 1 TO 9 SCALE data Snoeijs & Prentice (1989) Format : (I5,2X,12(I4,F2.0)) No. of couplets of species number and abundance per line : 12 No samples omitted Number of samples 181 Number of species 88 Number of occurrences 3088 File : SITETIME.DTA Title : DUMMY VARIABLES site + month FORSMARK Format : (I5,9(I5,F3.0)) No. of environmental variables : 29 No interaction terms defined No transformation of species data No species-weights specified No sample-weights specified No downweighting of rare species No. of active samples: 181 No. of passive samples: 0 No. of active species: 88 Total inertia in species data= Sum of all eigenvalues of CA = 3.55213 ****** Collinearity detected when fitting variable 11 ****** ****** Collinearity detected when fitting variable 29 ****** 1 **** Weighted correlation matrix (weight = sample total) **** SPEC AX1 1.0000 SPEC AX2 -.0289 1.0000 SPEC AX3 -.0076 -.0042 1.0000 SPEC AX4 -.0022 -.0250 .0027 1.0000 ENVI AX1 .9524 .0000 .0000 .0000 1.0000 ENVI AX2 .0000 .9116 .0000 .0000 .0000 1.0000 ENVI AX3 .0000 .0000 .9086 .0000 .0000 .0000 1.0000 ENVI AX4 .0000 .0000 .0000 .8633 .0000 .0000 .0000 1.0000 SITE AAA .1495 .0305 -.0528 -.1298 .1570 .0335 -.0581 -.1504 SITE BBB .0356 -.1545 -.3138 -.0067 .0374 -.1695 -.3454 -.0078 SITE CCC -.0853 .3036 .0023 .0079 -.0896 .3330 .0025 .0092 SITE DDD .1949 -.0423 -.0415 .6027 .2046 -.0464 -.0457 .6982 SITE EEE .0352 .2298 .1006 -.1455 .0369 .2521 .1107 -.1686 SITE FFF .0639 .2580 -.1106 -.3008 .0671 .2830 -.1217 -.3484 SITE GGG .2799 -.0458 .0831 -.3158 .2939 -.0502 .0914 -.3659 SITE HHH -.0323 -.1558 -.4567 .1067 -.0339 -.1709 -.5026 .1236 SITE III -.3910 -.2368 .6367 .1050 -.4106 -.2598 .7007 .1217 SITE JJJ -.1392 -.2867 .0316 -.0391 -.1462 -.3145 .0348 -.0453 SITE KKK -.1195 .0098 .0121 .1003 -.1255 .0107 .0134 .1162 28FEB 84 .2536 -.0933 .1428 .0898 .2663 -.1024 .1572 .1040 20MAR 84 .3353 -.0729 .1850 .0839 .3521 -.0800 .2037 .0972 10APR 84 .3100 -.0744 .1052 .0192 .3255 -.0816 .1157 .0222 02MAY 84 .2386 -.1466 .1793 -.2024 .2505 -.1609 .1974 -.2344 23MAY 84 .0714 -.2194 .0823 -.1378 .0750 -.2407 .0906 -.1597 12JUN 84 -.0819 -.1676 -.1451 .0057 -.0860 -.1838 -.1597 .0066 03JUL 84 -.2025 -.0969 -.0447 -.0614 -.2127 -.1063 -.0491 -.0712 24JUL 84 -.2148 -.1826 -.1663 -.0475 -.2256 -.2003 -.1830 -.0551 14AUG 84 -.2541 -.2865 -.1287 .0002 -.2668 -.3143 -.1416 .0002 06SEP 84 -.2043 -.1074 -.1420 -.1554 -.2146 -.1178 -.1562 -.1800 26SEP 84 -.2227 .1273 -.0580 -.0088 -.2338 .1396 -.0639 -.0102 16OCT 84 -.1298 .2452 -.0676 -.0093 -.1363 .2689 -.0744 -.0108 06NOV 84 .0046 .2156 .0351 -.0134 .0049 .2365 .0387 -.0155 27NOV 84 -.0336 .2215 -.0039 .1072 -.0353 .2430 -.0043 .1241 18DEC 84 -.0285 .2905 -.0126 .0633 -.0299 .3187 -.0139 .0733 07JAN 85 -.0241 .2267 .0374 .0808 -.0253 .2487 .0411 .0937 06FEB 85 .0581 .1700 .0229 .1454 .0610 .1865 .0252 .1685 07MAR 85 .2126 .0762 .0145 .1192 .2232 .0836 .0159 .1381 SPEC AX1 SPEC AX2 SPEC AX3 SPEC AX4 ENVI AX1 ENVI AX2 ENVI AX3 ENVI AX4 SITE AAA 1.0000 SITE BBB -.0881 1.0000 SITE CCC -.1149 -.0863 1.0000 SITE DDD -.1147 -.0861 -.1122 1.0000 SITE EEE -.1120 -.0840 -.1096 -.1094 1.0000 SITE FFF -.1124 -.0844 -.1100 -.1098 -.1072 1.0000 SITE GGG -.1096 -.0823 -.1073 -.1070 -.1045 -.1049 1.0000 SITE HHH -.1014 -.0761 -.0992 -.0990 -.0967 -.0971 -.0946 1.0000 SITE III -.1177 -.0884 -.1152 -.1150 -.1123 -.1127 -.1099 -.1017 SITE JJJ -.0887 -.0666 -.0868 -.0866 -.0846 -.0849 -.0828 -.0766 SITE KKK -.1115 -.0837 -.1091 -.1089 -.1063 -.1067 -.1040 -.0963 28FEB 84 .0083 -.0598 .0015 .0456 .0174 -.0014 .0124 -.0688 20MAR 84 .0111 -.0609 .0124 .0421 .0343 .0118 .0055 -.0700 10APR 84 .0127 .0069 .0104 .0184 .0027 .0080 .0019 -.0019 02MAY 84 -.0063 -.0099 -.0278 .0028 -.0079 -.0067 -.0103 .0049 23MAY 84 -.0091 .0099 -.0059 -.0038 -.0154 -.0216 -.0183 .0124 12JUN 84 -.0071 .0031 -.0125 -.0592 -.0009 .0090 -.0467 .0394 03JUL 84 -.0047 .0152 .0041 -.0322 -.0117 .0035 -.0229 .0334 24JUL 84 .0001 .0029 -.0152 -.0466 -.0002 -.0311 -.0337 .0494 14AUG 84 -.0156 .0237 -.0153 -.0084 -.0395 -.0284 -.0263 .0358 06SEP 84 -.0132 .0639 -.0239 -.0113 -.0148 -.0207 .0119 .0133 26SEP 84 -.0174 .0170 -.0013 .0066 .0083 -.0038 -.0139 .0214 16OCT 84 -.0260 -.0301 .0077 .0081 .0138 -.0016 .0004 .0181 06NOV 84 -.0163 .0309 -.0017 -.0013 .0161 -.0226 .0111 .0356 27NOV 84 -.0091 .0726 -.0004 -.0038 -.0059 .0030 .0377 .0371 18DEC 84 .0130 .0579 .0098 .0037 -.0017 .0279 -.0012 .0015 07JAN 85 .0341 -.0563 .0396 .0085 .0032 .0262 .0344 -.0648 06FEB 85 .0135 -.0533 .0098 .0167 .0200 .0621 .0253 -.0613 07MAR 85 .0477 -.0572 .0225 .0208 -.0052 .0091 .0448 -.0658 SITE AAA SITE BBB SITE CCC SITE DDD SITE EEE SITE FFF SITE GGG SITE HHH SITE III 1.0000 SITE JJJ -.0890 1.0000 SITE KKK -.1118 -.0842 1.0000 28FEB 84 .0410 -.0602 .0343 1.0000 20MAR 84 .0490 -.0613 -.0049 -.0550 1.0000 10APR 84 -.0009 -.0628 -.0064 -.0564 -.0574 1.0000 02MAY 84 .0195 .0600 -.0091 -.0612 -.0623 -.0639 1.0000 23MAY 84 .0288 .0898 -.0491 -.0582 -.0593 -.0607 -.0659 1.0000 12JUN 84 .0265 .0429 .0165 -.0524 -.0534 -.0547 -.0594 -.0565 03JUL 84 -.0146 .0431 .0008 -.0559 -.0569 -.0583 -.0633 -.0602 24JUL 84 .0288 .0506 .0080 -.0582 -.0593 -.0607 -.0659 -.0627 14AUG 84 .0209 .0735 -.0003 -.0673 -.0686 -.0703 -.0763 -.0726 06SEP 84 -.0102 .0258 -.0016 -.0625 -.0637 -.0652 -.0708 -.0673 26SEP 84 -.0345 .0114 .0148 -.0571 -.0582 -.0596 -.0647 -.0616 16OCT 84 -.0139 .0188 .0053 -.0599 -.0610 -.0625 -.0679 -.0645 06NOV 84 -.0147 -.0067 -.0216 -.0544 -.0554 -.0568 -.0617 -.0586 27NOV 84 -.0569 -.0464 -.0167 -.0582 -.0593 -.0607 -.0659 -.0627 18DEC 84 -.0579 -.0561 .0053 -.0504 -.0513 -.0526 -.0571 -.0543 07JAN 85 -.0054 -.0567 .0103 -.0509 -.0519 -.0531 -.0577 -.0549 06FEB 85 -.0107 -.0537 .0071 -.0482 -.0491 -.0503 -.0546 -.0519 07MAR 85 -.0014 -.0576 .0145 -.0517 -.0526 -.0539 -.0585 -.0557 SITE III SITE JJJ SITE KKK 28FEB 84 20MAR 84 10APR 84 02MAY 84 23MAY 84 12JUN 84 1.0000 03JUL 84 -.0542 1.0000 24JUL 84 -.0565 -.0602 1.0000 14AUG 84 -.0654 -.0697 -.0726 1.0000 06SEP 84 -.0607 -.0647 -.0673 -.0779 1.0000 26SEP 84 -.0555 -.0591 -.0616 -.0713 -.0661 1.0000 16OCT 84 -.0582 -.0620 -.0645 -.0747 -.0693 -.0634 1.0000 06NOV 84 -.0528 -.0563 -.0586 -.0679 -.0630 -.0576 -.0604 1.0000 27NOV 84 -.0565 -.0602 -.0627 -.0726 -.0673 -.0616 -.0645 -.0586 18DEC 84 -.0489 -.0521 -.0543 -.0628 -.0583 -.0533 -.0559 -.0508 07JAN 85 -.0494 -.0527 -.0549 -.0635 -.0589 -.0539 -.0565 -.0513 06FEB 85 -.0468 -.0498 -.0519 -.0601 -.0557 -.0510 -.0534 -.0485 07MAR 85 -.0502 -.0535 -.0557 -.0644 -.0598 -.0547 -.0573 -.0521 12JUN 84 03JUL 84 24JUL 84 14AUG 84 06SEP 84 26SEP 84 16OCT 84 06NOV 84 27NOV 84 1.0000 18DEC 84 -.0543 1.0000 07JAN 85 -.0549 -.0475 1.0000 06FEB 85 -.0519 -.0449 -.0454 1.0000 07MAR 85 -.0557 -.0482 -.0487 -.0461 1.0000 27NOV 84 18DEC 84 07JAN 85 06FEB 85 07MAR 85 N name (weighted) mean stand. dev. inflation factor 1 SPEC AX1 .0000 .6186 2 SPEC AX2 .0000 .5081 3 SPEC AX3 .0000 .4335 4 SPEC AX4 .0000 .3616 5 ENVI AX1 .0000 .5891 6 ENVI AX2 .0000 .4632 7 ENVI AX3 .0000 .3938 8 ENVI AX4 .0000 .3122 1 SITE AAA .1051 .3066 1.8838 2 SITE BBB .0620 .2412 1.5857 3 SITE CCC .1011 .3015 1.8549 4 SITE DDD .1007 .3009 1.8584 5 SITE EEE .0965 .2953 1.8204 6 SITE FFF .0971 .2962 1.8272 7 SITE GGG .0928 .2901 1.7991 8 SITE HHH .0805 .2721 1.7326 9 SITE III .1056 .3073 1.8976 10 SITE JJJ .0628 .2427 1.6100 11 SITE KKK .0957 .2942 .0000 12 28FEB 84 .0512 .2204 1.9855 13 20MAR 84 .0531 .2242 2.0201 14 10APR 84 .0556 .2291 2.0706 15 02MAY 84 .0648 .2462 2.2563 16 23MAY 84 .0590 .2356 2.1673 17 12JUN 84 .0484 .2147 1.9708 18 03JUL 84 .0546 .2273 2.0780 19 24JUL 84 .0590 .2356 2.1660 20 14AUG 84 .0775 .2674 2.4969 21 06SEP 84 .0674 .2508 2.3094 22 26SEP 84 .0570 .2319 2.1128 23 16OCT 84 .0623 .2417 2.2021 24 06NOV 84 .0520 .2220 2.0231 25 27NOV 84 .0590 .2356 2.1553 26 18DEC 84 .0449 .2070 1.8865 27 07JAN 85 .0458 .2091 1.8826 28 06FEB 85 .0412 .1987 1.8009 29 07MAR 85 .0471 .2119 .0000 **** Summary **** Axes 1 2 3 4 Total inertia Eigenvalues : .258 .177 .134 .089 3.552 Species-environment correlations : .952 .912 .909 .863 Cumulative percentage variance of species data : 7.3 12.2 16.0 18.5 of species-environment relation: 20.0 33.7 44.1 51.0 Sum of all unconstrained eigenvalues 3.552 Sum of all canonical eigenvalues 1.288 1 File with supplementary variables: BASINENV.DTA File : BASINENV.DTA Title : ENVIRONMENTAL FACTORS FORSMARK Format : (I4,F4.0,F5.0,F4.1,F3.0,F4.0,3F5.1,4F4.0,F5.1,F4.1,F3.0,F5.1,F5.0,2F No. of environmental variables : 20 No interaction terms defined 1 **** Weighted correlation matrix (weight = sample total) **** SPEC AX1 1.0000 SPEC AX2 -.0289 1.0000 SPEC AX3 -.0076 -.0042 1.0000 SPEC AX4 -.0022 -.0250 .0027 1.0000 ENVI AX1 .4676 .1297 -.2819 -.3893 1.0000 ENVI AX2 .1113 .5450 .0089 -.4192 .2380 1.0000 ENVI AX3 -.4506 .0166 .2925 .2852 -.9636 .0305 1.0000 ENVI AX4 -.3539 -.4441 .1622 .5144 -.7568 -.8149 .5544 1.0000 FLOW .3320 .4649 -.1450 -.5131 .7099 .8530 -.4957 -.9976 meaTanom -.1121 .4828 .1436 -.2330 -.2398 .8859 .4907 -.4531 SPEC AX1 SPEC AX2 SPEC AX3 SPEC AX4 ENVI AX1 ENVI AX2 ENVI AX3 ENVI AX4 FLOW 1.0000 meaTanom .5135 1.0000 FLOW meaTanom N name (weighted) mean stand. dev. inflation factor 1 SPEC AX1 .0000 .6186 2 SPEC AX2 .0000 .5081 3 SPEC AX3 .0000 .4335 4 SPEC AX4 .0000 .3616 5 ENVI AX1 .0000 .2893 6 ENVI AX2 .0000 .2769 7 ENVI AX3 .0000 .1268 8 ENVI AX4 .0000 .1860 9 FLOW 3.4640 1.8359 1.3581 18 meaTanom 4.6031 3.1800 1.3581 **** Summary **** Axes 1 2 3 4 Total inertia Species-environment correlations : .468 .545 .293 .514 Cumulative percentage variance of species data : 7.3 12.2 16.0 18.5 of species-environment relation: 28.4 57.3 .0 .0 Sum of all unconstrained eigenvalues 3.552 Sum of all canonical eigenvalues .218 [Tue Feb 24 08:12:05 1998] CANOCO call succeeded