[Fri Jan 23 15:44:47 1998] Log file cleared [Fri Jan 23 15:46:52 1998] Settings changed [Fri Jan 23 15:46:54 1998] Running CANOCO: [Fri Jan 23 15:46:54 1998] CON file [C:\canoco\samples\SPLITPLT\fig1.con] saved [Fri Jan 23 15:47:03 1998] CON file [C:\canoco\samples\SPLITPLT\fig1.con] saved Program CANOCO Version 4.0 September 1997 - written by Cajo J.F. Ter Braak Copyright (c) 1988-1997 Centre for Biometry, CPRO-DLO Box 100, 6700 AC Wageningen, the Netherlands. CANOCO performs (partial) (detrended) (canonical) correspondence analysis, principal components analysis and redundancy analysis. CANOCO is an extension of Cornell Ecology program DECORANA (Hill,1979) For explanation of the input/output see the manual or Ter Braak, C.J.F. (1995) Ordination. Chapter 5 in: Data Analysis in Community and Landscape Ecology (Jongman, R.H.G., Ter Braak, C.J.F. and Van Tongeren, O.F.R., Eds) Cambridge University Press, Cambridge, UK, 91-173 pp. *** Type of analysis *** Model Gradient analysis indirect direct hybrid linear 1=PCA 2= RDA 3 unimodal 4= CA 5= CCA 6 ,, 7=DCA 8=DCCA 9 10=non-standard analysis Type analysis number Answer = 2 *** Data files *** Species data : FUNGI2.DTA Covariable data : Environmental data : DESIGN.DTA Initialization file: Forward selection of envi. variables = 0 Scaling of ordination scores = 1 Diagnostics = 1 File : FUNGI2.DTA Title : 40 96sporo carps per 225 m*m plot TC*CED** S Format : (I5,5(I5,F10.3)) No. of couplets of species number and abundance per line : 5 No samples omitted Number of samples 64 Number of species 42 Number of occurrences 407 File : DESIGN.DTA Title : Baars 1995 design: stands(1-6); treatments (7-9); Age(10); soil type (11-12) Format : (I5,6(I5,F6.3)) No. of environmental variables : 12 No interaction terms defined ln(Ay+B)-transformation of species data A = 1.000 B = 1.000 Weight .00 is given to species 41 Weight .00 is given to species 42 No sample-weights specified Centring/standardization by species = 1 Centring/standardization by samples = 0 No. of active samples: 64 No. of passive samples: 0 No. of active species: 33 Total sum of squares in species data = 1586.86 Total standard deviation in species data TAU = .866808 ****** Collinearity detected when fitting variable 9 ****** ****** Collinearity detected when fitting variable 12 ****** 1 **** Correlation matrix **** SPEC AX1 1.0000 SPEC AX2 -.0954 1.0000 SPEC AX3 .0704 -.0338 1.0000 SPEC AX4 .0825 -.0203 .0334 1.0000 ENVI AX1 .8560 .0000 .0000 -.0001 1.0000 ENVI AX2 .0000 .8242 .0000 -.0001 .0000 1.0000 ENVI AX3 .0000 .0000 .7308 .0000 .0000 .0000 1.0000 ENVI AX4 .0000 .0000 .0000 .2637 .0000 .0000 .0000 1.0000 S .3628 .7316 .1296 .0083 .4238 .8877 .1773 .0318 A -.1092 -.3699 -.0928 .2309 -.1276 -.4489 -.1269 .8753 C -.2651 -.4007 -.0466 -.2148 -.3097 -.4862 -.0637 -.8147 Age -.6434 .4540 -.2419 -.0392 -.7516 .5508 -.3310 -.1485 Podzol -.2469 -.1070 .6783 .0518 -.2884 -.1298 .9281 .1963 Areno .2469 .1070 -.6783 -.0518 .2884 .1298 -.9281 -.1963 SPEC AX1 SPEC AX2 SPEC AX3 SPEC AX4 ENVI AX1 ENVI AX2 ENVI AX3 ENVI AX4 S 1.0000 A -.4472 1.0000 C -.6000 -.4472 1.0000 Age .1070 -.2393 .1070 1.0000 Podzol -.0667 .1491 -.0667 -.1911 1.0000 Areno .0667 -.1491 .0667 .1911 -1.0000 1.0000 S A C Age Podzol Areno N name (weighted) mean stand. dev. inflation factor 1 SPEC AX1 .0000 .6216 2 SPEC AX2 .0000 .5229 3 SPEC AX3 .0000 .2707 4 SPEC AX4 .0000 .2241 5 ENVI AX1 .0000 .5321 6 ENVI AX2 .0000 .4310 7 ENVI AX3 .0000 .1978 8 ENVI AX4 .0000 .0591 7 S .3750 .4841 1.2500 8 A .2500 .4330 1.3233 9 C .3750 .4841 .0000 10 Age 2.7886 1.0154 1.0893 11 Podzol .3750 .4841 1.0503 12 Areno .6250 .4841 .0000 **** Summary **** Axes 1 2 3 4 Total variance Eigenvalues : .283 .186 .039 .003 1.000 Species-environment correlations : .856 .824 .731 .264 Cumulative percentage variance of species data : 28.3 46.9 50.8 51.1 of species-environment relation: 55.4 91.7 99.3 100.0 Sum of all unconstrained eigenvalues 1.000 Sum of all canonical eigenvalues .511 1 File with supplementary variables: NUTRIENT.DTA File : NUTRIENT.DTA Title : Baar: bodhum ln-values except pH Format : (1X,I5,(T10,6F11.4)) No. of environmental variables : 8 No interaction terms defined 1 **** Correlation matrix **** SPEC AX1 1.0000 SPEC AX2 -.0954 1.0000 SPEC AX3 .0704 -.0338 1.0000 SPEC AX4 .0825 -.0203 .0334 1.0000 ENVI AX1 .8391 -.0148 .0230 .0454 1.0000 ENVI AX2 -.0178 .6971 -.0258 .0896 -.0212 1.0000 ENVI AX3 .0317 -.0295 .6090 .0361 .0378 -.0423 1.0000 ENVI AX4 .1019 .1668 .0588 .3744 .1214 .2393 .0965 1.0000 N -.5222 -.2477 .2293 -.1534 -.6223 -.3553 .3766 -.4097 NH -.6108 -.2507 .1401 -.0385 -.7279 -.3597 .2300 -.1029 NO -.7664 -.0690 .1349 -.0424 -.9134 -.0989 .2215 -.1134 P -.4135 -.2928 .3545 -.0174 -.4928 -.4201 .5821 -.0464 NA -.5175 -.3154 -.0749 -.2078 -.6167 -.4525 -.1229 -.5550 K -.6882 -.0503 -.1066 -.0325 -.8201 -.0721 -.1751 -.0868 pH .3047 .6188 -.0513 .0856 .3631 .8878 -.0843 .2286 C -.3983 -.5478 .0996 -.0467 -.4747 -.7858 .1635 -.1248 SPEC AX1 SPEC AX2 SPEC AX3 SPEC AX4 ENVI AX1 ENVI AX2 ENVI AX3 ENVI AX4 N 1.0000 NH .7728 1.0000 NO .6590 .7224 1.0000 P .7419 .8284 .5632 1.0000 NA .5149 .6931 .5375 .5828 1.0000 K .5438 .7054 .6305 .6030 .7113 1.0000 pH -.5620 -.6624 -.5095 -.5951 -.6291 -.3448 1.0000 C .6605 .7689 .4840 .7216 .6387 .4708 -.8525 1.0000 N NH NO P NA K pH C N name (weighted) mean stand. dev. inflation factor 1 SPEC AX1 .0000 .6216 2 SPEC AX2 .0000 .5229 3 SPEC AX3 .0000 .2707 4 SPEC AX4 .0000 .2241 5 ENVI AX1 .0000 .5216 6 ENVI AX2 .0000 .3645 7 ENVI AX3 .0000 .1649 8 ENVI AX4 .0000 .0839 1 N 4.3162 .6445 3.0333 2 NH 3.4405 .7093 6.6443 3 NO .8068 1.2692 2.7944 4 P 2.1204 .5325 3.7457 5 NA 3.5406 .7358 3.1370 6 K 4.6755 .5580 3.3601 7 pH 3.0697 .2394 4.8479 8 C 3.1229 .7678 5.9347 **** Summary **** Axes 1 2 3 4 Total variance Species-environment correlations : .839 .697 .609 .374 Cumulative percentage variance of species data : 28.3 46.9 50.8 51.1 of species-environment relation: 57.9 86.2 92.0 93.5 Sum of all unconstrained eigenvalues 1.000 Sum of all canonical eigenvalues .470 [Fri Jan 23 15:47:11 1998] CANOCO call succeeded [Fri Jan 23 15:47:14 1998] Running CanoDraw [Fri Jan 23 15:47:17 1998] CanoDraw call succeeded [Fri Jan 23 15:47:17 1998] Running CanoDraw [Fri Jan 23 15:47:20 1998] CanoDraw call succeeded